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PhyML-SMS 1.8.1_1

Alignment file

phylip/fasta format

Data type

Information file

Precompute file containning sequence description (dna or protein)

Statistical criterion to select the model

Tree topology search

NNI (Nearest Neighbor Interchange)

SPR (Subtree Pruning and Regraphing)

Branch support

Number of bootstrap replicates

Must be a positive integer

User Tree File (Optional)

newick format

Number of random starting trees (no effect when NNI selected)

References to cite

2017

Lefort, Vincent and Longueville, Jean-Emmanuel and Gascuel, Olivier. SMS: Smart Model Selection in PhyML. Molecular Biology and Evolution, 34:2422–2424
2017

Lefort, Vincent and Longueville, Jean-Emmanuel and Gascuel, Olivier. SMS: Smart Model Selection in PhyML. Molecular Biology and Evolution, 34:2422–2424
2017

Lefort, Vincent and Longueville, Jean-Emmanuel and Gascuel, Olivier. SMS: Smart Model Selection in PhyML. Molecular Biology and Evolution, 34:2422–2424
2017

Lefort, Vincent and Longueville, Jean-Emmanuel and Gascuel, Olivier. SMS: Smart Model Selection in PhyML. Molecular Biology and Evolution, 34:2422–2424
2017

Lefort, Vincent and Longueville, Jean-Emmanuel and Gascuel, Olivier. SMS: Smart Model Selection in PhyML. Molecular Biology and Evolution, 34:2422–2424
2017

Lefort, Vincent and Longueville, Jean-Emmanuel and Gascuel, Olivier. SMS: Smart Model Selection in PhyML. Molecular Biology and Evolution, 34:2422–2424
2017

Lefort, Vincent and Longueville, Jean-Emmanuel and Gascuel, Olivier. SMS: Smart Model Selection in PhyML. Molecular Biology and Evolution, 34:2422–2424
2017

Lefort, Vincent and Longueville, Jean-Emmanuel and Gascuel, Olivier. SMS: Smart Model Selection in PhyML. Molecular Biology and Evolution, 34:2422–2424
2017

Lefort, Vincent and Longueville, Jean-Emmanuel and Gascuel, Olivier. SMS: Smart Model Selection in PhyML. Molecular Biology and Evolution, 34:2422–2424